US7429476-B2  Altschul, Stephen F. et al., "Basic Local Alignment Search Tool," J. Mol. Biol., 215:403-410.;  Bajar, Aslam, et al., "Identification of a fungal cutinase promoter that is inducible by a plant signal via a phosphorylated trans-acting factor," Proc. Natl. Acad. Sci. USA, vol. 88, pp. 8208-8212, Sep. 1991.;  Bennett & Lasure (1991) "More Gene Manipulations in Fungi," Academic Press, San Diego, pp. 70-76.;  Berka et al., "Isolation and characterization of the Aspergillus Oryzae gene encoding aspergillopepsin O," Gene (1993) 125:195-198.;  Berka et al., "Molecular Cloning and Deletion of the Gene EncodingAspergillopepsin A, from Aspergillus-Awamori," Gene, V. 86, N.2, 1990, pp. 153-162.;  Berka et al., "Molecular Cloning and Deletion of the Gene encoding Aspergillus A From Aspergillus-awamori," Gene, v.86, N. 2, 1990, pp. 153-162.;  Boel, E. et al., Two different types of intervening sequences in the glucoamylase gene from Aspergillus niger, The EMBO Journal, vol. 3, No. 7, pp. 1581-1585, 1984.;  Brigidi, DeRossi, Bertarini, Riccardi and Matteuzzi, (1990), FEMS Microbiol. Lett. 67: 135-138.;  Cees, A. M. et al., "Heterologous Gene Expression in Filamentous Fungi," More Gene Manipulations in Fungi, Bennett, J.W. et al., ed., pp. 396-428, Academic Press, 1991.;  Clegg, 1978 in "Biochemical Aspects of New Protein Food", J, Adler-Nissen, B,O, Eggum, L, Munck & H.s. Olsen eds., p. 109-117, Pergamon, Oxford.;  Database EMBL "Trichoderma harzianum, proA gene for putative asparate protease," EBI accession No. Em_pro :AJ276388 Dec. 3, 2000.;  Database EMBL, Dec. 3, 2000, "Trichoderma harzianum proA gene for putative aspartate protease," retrieved from EBI accession No. EM_PRO :AJ276388_UNIPROT :Q9HDT6.;  Database Uniprot Oct. 25, 2004, Aspartyl protease,UNIPROT ;Q64IDO.;  Davis, et al., "Genetic and Microbiological Research Techniques for Neurospora crassa," Methods Enzymol., 17:79-143 (1970).;  Dayhoff et al., "A Model of Evolutionary Change in Proteins," Atlas of Protein Sequence and Structure5:Suppl. 3 (National Biomedical Research Foundation, Washington, D.C. (1978).;  Delgado-Jarana et al., "Aspartyl protease from Trichoderma harzianum CECT 2413 : Cloning and characterization," Microbiology, V. 148, N. 5, May 2002.;  Fernandez-Abalos et al., "Posttranslational processing of the xylanase Xys1L from Streptomyces halstedii JM8 is carried out by secreted serine proteases," Microbiology, 2003, 149, 1623-1632.;  Finkelstein, et al., ed., Biotechnology of Filamentous Fungi Technology and Products, Chapter 6, pp. 113-156, Butterworth-Heinemann, Boston, MA, 1992. pp. 113-156.;  Goldman, et al., "Transformation of Trichoderma harzianum by high-voltage electric pulse," Current Genetics, 17:169-174, 1990.;  Gomi et al. (Biosci. Biotech. Biochem. (1993) 57(7):1095-1100).;  Lorito, M., et al., "Biolistic transformation of Trichoderma harzianum and Gliocladium virens using plasmid and genomic DNA," Current Genetics, 24:349-356, 1993.;  Mullaney, et al., "Primary structure of the trpC gene from Aspergillus nidulens," Mol. Gen. Genet., 199:37-45, 1985.;  Needleman, et al., "A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins," (1970) J. Mol. Biol., vol. 48, pp. 443-453.;  Nevalainen, et al., "The Molecular Biology of Trichoderma and Its Application to the Expression of Both Homologous and Heterologous Genes," Molecular Industrial Mycology, Leong and Berka, ed., Marcel Dekker, Inc., NY, 1992. pp. 129-148.;  Nunberg, et al., "Molecular Cloning and Characterization of the Glucoamylase Gene of Aspergillus awamori," Molecular and Cellular Biology, pp. 2306-2315, Nov. 1984.;  Pearson, et al., "Improved tools for biological sequence comparison," (1988) Proc. Natl. Acad. Sci. USA vol. 85, pp. 2444-2448.;  Penttila, et al., "A versatile transformation system for the cellulolytic filamentous fungus Trichoderma reesei," Gene, V61, pp. 155-164, 1987.;  RD 216,034_"Enzymatic silk degumming," Research Disclosure Journal, Database No. 216034.;  Seffernick et al., 2001, Journal of Bacteriology, vol. 183, No. 8, pp. 2405-2410.;  Shpaer, Eugene G., "GeneAssist," Meth. Mol. Biol., 70:173-187 (1997).;  Smith, et al., "Comparison of Biosequences," Adv. Appl. Math. 2:482-489, 1981.;  Viterbo et al., "Isolation of two aspartyl proteases from Trichoderma asperellum expressed using colonization of cucumber roots," FEMS Microbiology Ltters, v. 238, N. 1, Sep. 2004, pp. 151-158.;  Yelton, et al., "Transformation of Aspergillus nidulans by using a trpC plasmid," Proc. Natl. Acad. Sci., vol. 81, pp. 1470-1474, Mar. 1984.US7563607-B2  ExPasy.org Sequnce Database Primary accession No. Q2WBH2 http://ca.expasy.org/uniprot/Q2WBH2.;  G. Sheir-Neiss and B. S. Montenecourt Characterization of the secreted cellulases of Trichoderma reesei wild type and mutants during controlled fermentations Appl Microbiol Biotechnol (1984) 20-46-53.;  Jesus Delgado-Jarana, Ana M. Rincon and Tahila Beniltez Aspartyl protease from Trichoderma harzianum CECT 2413: cloning and characterization Microbiology (2002), 148, 1305-1315.;  Sanjeev K. Sharma , Krishan L. Kalra , Harmeet S. Grewal Fermentation of enzymatically saccharified sunflower stalks for ethanol production and its scale up Bioresource Technology 85 (2002) 31-33.;  UniPror 7.2 Sequence Database Search Results accessed Dec. 29, 2006.EP2363460-A2  BERKA ET AL. GENE vol. 96, 19 June 0007, page 313;  BERKA ET AL. GENE vol. 125, 19 September 0007, pages 195 - 198;  GOMI ET AL. BIOSCI. BIOTECH. BIOCHEM. vol. 57, no. 7, 19 September 0007, pages 1095 - 1100;  'Molecular Cloning A Laboratory Manual', 19 May 0007, COLD SPRING HARBOR LABORATORY PRESS;  'Short Protocols in Molecular Biology', 20 February 0001;  'DNA Cloning', vol. I, II, 19 January 0007;  'Oligonucleotide Synthesis', 19 December 0006;  'Nucleic Acid Hybridization', 19 December 0006;  'Transcription And Translation', 19 December 0006;  'Culture Of Animal Cells', 19 March 0007, ALAN R. LISS, INC.;  'Immobilized Cells And Enzymes', 19 February 0007, IRL PRESS;  B. PERBAL A PRACTICAL-GUIDE TO MOLECULAR CLONING 19 December 0006,;  'Methods In Enzymology', ACADEMIC PRESS, INC.;  'Gene Transfer Vectors For Mammalian Cells', 19 March 0007, COLD SPRING HARBOR LABORATORY;  'Methods In Enzymology', vol. 154, 155,;  'Immunochemical Methods In Cell And Molecular Biology', 19 March 0007, ACADEMIC PRESS;  'Handbook Of Experimental Immunology', vol. I-IV, 19 February 0007;  'Manipulating the Mouse Embryo', 19 February 0007, COLD SPRING HARBOR LABORATORY PRESS;  SINGLETON ET AL.: 'DICTIONARY OF MICROBIOLOGY AND MOLECULAR BIOLOGY', 19 October 0007, JOHN WILEY AND SONS;  HALEMARKHAM: 'THE HARPER COLLINS DICTIONARY OF BIOLOGY', 19 July 0007, HARPER PERENNIA;  ALEXOPOULOS, C. J.: 'INTRODUCTORY MYCOLOGY', 19 February 0005, WILEY;  'AINSWORTH AND BISBY DICTIONARY OF THE FUNGI', 20 January 0001, CAB INTERNATIONAL UNIVERSITY PRESS;  T.A. -BROWN: 'Gene Cloning, An Introduction', 19 November 0007, CHAPMAN AND HALL;  'Current Protocols in Molecular Biology', 19 November 0007, GREENE PUBLISHING AND WILEY-INTERSCIENCE;  NEEDLEMAN ET AL. J. MOL. BIOL. vol. 48, 19 October 0005, page 443;  SMITH ET AL. ADV. APPL. MATH. vol. 2, 19 September 0006, page 482;  PEARSON ET AL. PROC. NATL. ACAD. SCI. vol. 85, 19 April 0007, page 2444;  SMITH-WATERMAN METH. MOL. BIOL. vol. 70, 19 January 0008, pages 173 - 187;  ALTSCHUL ET AL. J. MOL. BIOL. vol. 215, 19 June 0007, pages 403 - 410;  ALTSCHUL ET AL. METH. ENZYM. vol. 266, 19 December 0007, pages 460 - 480;  METH. MOL. BID. vol. 70, 19 January 0008, pages 173 - 187;  SAMBROOK ET AL.: 'Molecular Cloning, A Laboratory Manual', 19 May 0007;  KRIEGLER: 'Gene Transfer and Expression: A Laboratory Manual', 19 June 0007;  'Current Protocols in Molecular Biology', 19 October 0007;  NUNBERG ET AL. MOL. CELL BIOL. vol. 4, 19 December 0006, pages 2306 - 2315;  YELTON, M. ET AL. PNAS USA vol. 81, 19 December 0006, pages 1470 - 1474;  MULLANEY, E.J. ET AL. MGG vol. 199, 19 January 0007, pages 37 - 45;  NUNBERG, J.H. ET AL. MOL. CELL BIOL. vol. 4, 19 December 0006, page 2306;  BOEL, E. ET AL. EMBO J. vol. 3, 19 December 0006, pages 1581 - 1585;  'More Gene Manipulations in Fungi', 19 July 0007, ACADEMIC PRESS pages 70 - 76,396-4;  FINKELSTEIN ET AL.: 'Biotechnology of Filamentous Fungi', 19 August 0007, EDS BUTTERWORTH-HEINEMANN;  KINGHORN ET AL.: 'Applied Molecular Genetics of Filamentous Fungi', 19 August 0007, CHAPMAN AND HALL;  DIPIETROHARMAN CURR. GENET. vol. 24, 19 September 0007, pages 349 - 356;  GOLDMAN, VANMONTAGUHERRERA-ESTRELLA CURR. GENET. vol. 17, 19 June 0007, pages 169 - 174;  PENTTILANEVALAINENRATTOSALMINENKNOWLES GENE vol. 6, 19 March 0007, pages 155 - 164;  NEVALAINEN ET AL.: 'Molecular Industrial Mycology', 19 August 0007, MARCEL DEKKER INC. article 'The Molecular Biology of Trichoderma and its Application to the Expression of.Both Homologous and Heterologous Genes', pages 129 - 148;  YELTONHAMERTIMBERLAKE PROC. NATL. ACAD. SCI. USA vol. 81, 19 December 0006, pages 1470 - 1474;  BAJARPODILAKOLATTUKUDY PROC. NATL: ACAD. SCI. vol. 88, 19 July 0007, pages 8202 - 8212;  HOPWOOD ET AL.: 'Genetic Manipulation of Streptomyces: Laboratory Manual', 19 January 0007, THE JOHN INNES FOUNDATION;  FERNANDEZ-ABALOS ET AL. MICROBIOL vol. 149, 20 March 0001, pages 1623 - 1632;  BRIGIDIDEROSSIBERTARINIRIOCARDIMATTEUZZI FEMS MICROBIOL. LETT. vol. 55, 19 June 0007, pages 135 - 138;  KIESER, TMJ. BIBBMJ. BUTTNERKF CHATERD.A. HOPWOOD: 'PRACTICAL STREPTOMYCES GENETICS', 20 December 0002, JOHN INNES FOUNDATION;  HARWOOD: 'MOLECULAR BIOLOGICAL METHODS FOR BACILLUS', 19 June 0007, JOHN WILEY;  CLEGG: 'Biochemical Aspects of New Protein Food', 19 June 0006, PERGAMON pages 109 - 117;  K.A. JACQUES ET AL.: 'Fuel and Industrial Alcohol Industries', 19 March 0008, UNIVERSITY PRESS article 'The Alcohol Textbook, A Reference for the Beverage';  S. LEWIS: 'Industrial Enzymology', 19 December 0007, STOCKTON PRESS article 'Fermentation Alcohol';  DAVIS ET AL. METHODS ENZYMOL. vol. 17, 19 October 0005, pages 79 - 143EP1831362-B1  VITERBO A ET AL: "Isolation of two aspartyl proteases from Trichoderma asperellum expressed during colonization of cucumber roots" FEMS MICROBIOLOGY LETTERS, AMSTERDAM, NL, vol. 238, no. 1, 1 September 2004 (2004-09-01), pages 151-158, XP004543978 ISSN: 0378-1097 -&DATABASE UniProt [Online] 25 October 2004 (2004-10-25), "Aspartyl protease." XP002382193 retrieved from EBI accession no. UNIPROT:Q64ID0 Database accession no. Q64ID0;  DATABASE EMBL [Online] 3 December 2000 (2000-12-03), "Trichoderma harzianum proA gene for putative aspartate protease" XP002382194 retrieved from EBI accession no. EM_PRO:AJ276388 Database accession no. AJ276388 -&DATABASE UniProt [Online] 1 March 2001 (2001-03-01), "Putative aspartate protease." XP002382195 retrieved from EBI accession no. UNIPROT:Q9HDT6 Database accession no. Q9HDT6;  BERKA R M ET AL: "MOLECULAR CLONING AND DELETION OF THE GENE ENCODING ASPERGILLOPEPSIN A FROM ASPERGILLUS-AWAMORI" GENE (AMSTERDAM), vol. 86, no. 2, 1990, pages 153-162, XP002382185 ISSN: 0378-1119 cited in the application;  DELGADO-JARANA JESUS ET AL: "Aspartyl protease from Trichoderma harzianum CECT 2413: Cloning and characterization" MICROBIOLOGY (READING), vol. 148, no. 5, May 2002 (2002-05), pages 1305-1315, XP002382445 ISSN: 1350-0872US8075694-B2  Allison, Daniel S. et al., Transformation of the thermophilic fungus Humicola grisea var. thermoidea and overproduction of Humicola glucoamylase, Current Genetics, vol. 21, pp. 225-229, 1992.;  Altschul et al., "Basic Local Alignment Statistics, Methods in Enzymology", V. 266, pp. 460-480 (1993).;  Ashikari, Toshihiko et al., Rhizopus Raw-Starch-Degrading Glucoamylase : Its Cloning and Expression in Yeast, Agric. Biol. Chem., vol. 50, No. 4, pp. 957-964, 1986.;  Bajar, Aslam, et al., "Identification of a fungal cutinase promoter that is inducible by a plant signal via a phosphorylated trans-acting factor, " Proc. Natl. Acad. Sci. USA, vol. 88, pp. 8208-8212, Sep. 1991.;  Boel, E. et al., Glucoamylases G1 and G2 from Aspergillus niger are synthesized from two different but closely related mRNAs, The EMBO Journal, vol. 3, No. 5, pp. 1097-1102, 1984.;  Boel, E. et al., Two different types of intervening sequences in the glucoamylase gene from Aspergillus niger, The EMBO Journal, vol. 3, No. 7, pp. 1581-1585, 1984.;  Brigidi, DeRossi, Bertarini, Riccardi and Matteuzzi, (1990), FEMS Microbiol. Lett. 67: 135-138.;  Campos et al., "Purification and Characterization of a Glucoamylase from Humicola grisea," Applied and Envir. Micro., Jun. 1995, p. 2436-2438.;  Chen, Hsiu-mei et al., "Identification and elimination by site-directed mutagenesis of thermolabile aspartyl bonds in Aspergillus awamori glucoamylase," Protein Engineering, vol. 8, No. 6, pp. 575-582, 1995.;  Chen, Hsiu-mei et al., Effect of replacing helical glycine residues with alanines on reversible and irreversible stability and production of Aspergillus awamori glucoamylase, Protein Engineering, vol. 9, No. 6, pp. 499-505, 1996.;  Chen, Frank Y. et al., "Regulation of mammalian ribonucleotide reductase R1 mRNA stability is mediated by a ribonucleotide reductase R1 mRNA 3'-untranslated region cis-trans interaction through a protein kinase C-controlled pathway, " Biochem. J., vol. 302, pp. 125-132, 1994.;  Database EMBL pp. 1-2, Mar. 1, 2001, Delgado-Jarana et al., "Putative aspartate protease", retrieved from EBI Datagase accession No. Q9HDT6.;  Database EMBL pp. 1-2, Oct. 25, 2004 Viterbo et al., "Aspartyl protease" retrieved from EBI Database accession No. Q641D0.;  Database EMBL pp. 1-3, Dec. 7, 2005, Mantyla, "Hypocrea jecorina proA gene for aspartic protease, exons 1-2, strain QM6a", retrieved from EBI Database accession No. AM168137.;  Dayhoff et al., "A Model of Evolutionary Change in Proteins," Atlas of Protein Sequence and Structure 5:Suppl. 3 (National Biomedical Research Foundation, Washington, D.C. (1978).;  Eneyskaya et al., "Acid protease from richoderma reesei : limited proteolysis of fungal carbohydrases," Applied Microbiology and Biotechnology, V. 52, 1999, pp. 226-231.;  Fernandez-Abalos et al., "Posttranslational processing of the xylanase Xys1L from Streptomyces halstedii JM8 is carried out by secreted serine proteases," Microbiology, 2003, 149, 1623-1632.;  Finkelstein, David B. et al., "Biotechnology of Filamentous Fungi," Technology and Products, Butterworth-Heinemann, David Finkelstein, ed., pp. 113-156, 1992.;  Goldman, et al., "Transformation of Trichoderma harzianum by high-voltage electric pulse," Current Genetics, 17:169-174, 1990.;  Han et al.m "Amylolysis of Raw Corn by Aspergillus niger for Simultaneous Ethaol Fermentation," Biot.&Bioeng., V30, pp. 225-232 (1987).;  Hata, Yoji et al., The Glucoamylase cDNA from Aspergillus oryzae : Its Cloning, Nucleotide Sequence, and Expression in Saccharomyces cerevisiae, Agric. Biol. Chem., vol. 55, No. 4, pp. 941-949, 1991.;  International Search Report for PCT/US2005/046474, filed Dec. 21, 2005.;  Jensen, Bo et al., Purification of extracellular amylotic enzymes from the thermophilic fungus Thermomyces lanuginosus, Can. J. Microbiol., vol. 34, pp. 218-223.;  Ponnampalam et al., "Effect of Germ and Fiber Removal on Production of Ethanol from Corn," Applied Biochem and Biotech., V. 113-116, 2004.;  Singh et al., "An Enzymatic Process for Corn Wet Milling," Advances in Food and Nutrition Res., V. 48, pp. 151-171, 2004.;  Singh et al., "Recovery of Fiber in the Corn Dry-Grind Ethanol Process : A Feedstock for Valuable Coproducts," Cereal Chemistry, V. 76,N.6, 1999.;  Smith, et al.,"Comparison of Biosequences," Adv. Appl. Math. 2:482-489, 1981.;  Takahashi et al., "Different Behavior towards Raw Starch of Three Forms of Glucoamylase from a Rhizopus Sp.,"J. Biochem., 663- 671, (1985).;  Taylor, Pamela M. et al., Some Properties of a Glucoamylase Produced by the Thermophilic Fungus Humicola lanuginosa, Carbohydrate Research, vol. 61, pp. 301-308, 1978.;  Tosi, Luis Ricardo Orsini et al., Purification and characterization of an extracellular glycoamylase from the thermophilic fungus Humicola grisea var. thermoidea, Can J. Microbiol., vol. 39, pp. 846-855, 1993.;  Ueda et al., "Production of Ethanol from Raw Cassava Starch by a Nonconventional Fermentation Method," Biotechnology and Bioengineering, Vol. XXIII, 291-299, (1981).;  Wang et al., "Comparison of enzymatic (E-Mill) and conventional dry=grind corn processes using a granular starch hydrolyzing enzyme," Cereal Chemistry, V. 82, Nov. 2005.;  Yelton, et al., "Transformation of Aspergillus nidulans by using a trpC plasmid," Proc. Natl. Acad. Sci., vol. 81, pp. 1470-1474, Mar. 1984.EP2363460-A3  VITERBO A ET AL: "Isolation of two aspartyl proteases from Trichoderma asperellum expressed during colonization of cucumber roots", FEMS MICROBIOLOGY LETTERS, AMSTERDAM, NL, vol. 238, no. 1, 1 September 2004 (2004-09-01), pages 151 - 158, XP004543978, ISSN: 0378-1097;  DELGADO-JARANA JESUS ET AL: "Aspartyl protease from Trichoderma harzianum CECT 2413: Cloning and characterization", MICROBIOLOGY (READING), vol. 148, no. 5, May 2002 (2002-05-01), pages 1305 - 1315, XP002382445, ISSN: 1350-0872;  BERKA R M ET AL: "MOLECULAR CLONING AND DELETION OF THE GENE ENCODING ASPERGILLOPEPSIN A FROM ASPERGILLUS-AWAMORI", GENE (AMSTERDAM), vol. 86, no. 2, 1990, pages 153 - 162, XP002382185, ISSN: 0378-1119WO2006073839-A3  VITERBO A ET AL: "Isolation of two aspartyl proteases from Trichoderma asperellum expressed during colonization of cucumber roots" FEMS MICROBIOLOGY LETTERS, AMSTERDAM, NL, vol. 238, no. 1, 1 September 2004 (2004-09-01), pages 151-158, XP004543978 ISSN: 0378-1097 -& DATABASE UniProt [Online] 25 October 2004 (2004-10-25), "Aspartyl protease." XP002382193 retrieved from EBI accession no. UNIPROT:Q64ID0 Database accession no. Q64ID0;  DATABASE EMBL [Online] 3 December 2000 (2000-12-03), "Trichoderma harzianum proA gene for putative aspartate protease" XP002382194 retrieved from EBI accession no. EM_PRO:AJ276388 Database accession no. AJ276388 -& DATABASE UniProt [Online] 1 March 2001 (2001-03-01), "Putative aspartate protease." XP002382195 retrieved from EBI accession no. UNIPROT:Q9HDT6 Database accession no. Q9HDT6;  BERKA R M ET AL: "MOLECULAR CLONING AND DELETION OF THE GENE ENCODING ASPERGILLOPEPSIN A FROM ASPERGILLUS-AWAMORI" GENE (AMSTERDAM), vol. 86, no. 2, 1990, pages 153-162, XP002382185 ISSN: 0378-1119 cited in the application;  DELGADO-JARANA JESUS ET AL: "Aspartyl protease from Trichoderma harzianum CECT 2413: Cloning and characterization" MICROBIOLOGY (READING), vol. 148, no. 5, May 2002 (2002-05), pages 1305-1315, XP002382445 ISSN: 1350-0872;  VITERBO A ET AL: "Isolation of two aspartyl proteases from Trichoderma asperellum expressed during colonization of cucumber roots", FEMS MICROBIOLOGY LETTERS, AMSTERDAM, NL, vol. 238, no. 1, 1 September 2004 (2004-09-01), pages 151 - 158, XP004543978, ISSN: 0378-1097;  DATABASE EMBL [online] 3 December 2000 (2000-12-03), "Trichoderma harzianum proA gene for putative aspartate protease", XP002382194, retrieved from EBI accession no. EM_PRO:AJ276388 Database accession no. AJ276388;  BERKA R M ET AL: "MOLECULAR CLONING AND DELETION OF THE GENE ENCODING ASPERGILLOPEPSIN A FROM ASPERGILLUS-AWAMORI", GENE (AMSTERDAM), vol. 86, no. 2, 1990, pages 153 - 162, XP002382185, ISSN: 0378-1119;  DELGADO-JARANA JESUS ET AL: "Aspartyl protease from Trichoderma harzianum CECT 2413: Cloning and characterization", MICROBIOLOGY (READING), vol. 148, no. 5, May 2002 (2002-05-01), pages 1305 - 1315, XP002382445, ISSN: 1350-0872US8173409-B2  UniProt 201011 database entry Q8X177 9HYPO, integrated on Mar. 1, 2002, and sequence alignment with SEQ ID No. 9 of the instant application.;  Dayhoff et al., "A Model of Evolutionary Change in Proteins," Atlas of Protein Sequence and Structure 5:Suppl. 3 (National Biomedical Research Foundation, Washington, D.C. (1978).;  DeRossi should be Brigidi, DeRossi, Bertarini, Riccardi and Matteuzzi, (1990), FEMS Microbiol. Lett. 67: 135-138.;  Finkelstein, et al., ed., Biotechnology of Filamentous Fungi, Technology and Products, Chapter 6, pp. 113-156, Butterworth-Heinemann, Boston, MA, 1992. pp. 113-156.;  Fernandez-Abalos et al., "Posttranslational processing of the xylanase Xys1L from Streptomyces halstedii JM8 is carried out by secreted serine proteases," Microbiology, 2003, 149, 1623-1632.;  Goldman, et al., "Transformation of Trichoderma harzianum by high-voltage electric pulse," Current Genetics, 17:169-174, 1990.;  Gomi et al. (Biosci. Biotech. Biochem. (1993) 57(7):1095-1100).;  Lorito, M., et al., "Biolistic transformation of Trichoderma harzianum and Gliocladium virens using plasmid and genomic DNA," Current Genetics, 24:349-356, 1993.;  Mullaney, et al., "Primary structure of the trpC gene from Aspergillus nidulans," Mol. Gen. Genet., 199:37-45, 1985.;  Nevalainen, et al., "The Molecular Biology of Trichoderma and Its Application to the Expression of Both Homologous and Heterologous Genes," Molecular Industrial Mycology, Leong and Berka, ed., Marcel Dekker, Inc., NY, 1992. pp. 129-148.;  Needleman, et al., "A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins," (1970) J. Mol. Biol., vol. 48, pp. 443-453.;  Nunberg, et al., "Molecular Cloning and Characterization of the Glucoamylase Gene of Aspergillus awamori," Molecular and Cellular Biology, pp. 2306-2315, Nov. 1984.;  Pearson, et al., "Improved tools for biological sequence comparison," (1988) Proc. Natl. Acad. Sci. USA vol. 85, pp. 2444-2448.;  Penttila, et al., "A versatile transformation system for the cellulolytic filamentous fungus Trichoderma reesei," Gene, V61, pp. 155-164, 1987.;  RD 216,034_"Enzymatic silk degumming," Research Disclosure Journal, Database No. 216034, (1982).;  Seffernick et al., 2001, Journal of Bacteriology, vol. 183, No. 8, pp. 2405-2410.;  Smith, et al.,"Comparison of Biosequences," Adv. Appl. Math. 2:482-489, 1981.;  Shpaer, Eugene G., "GeneAssist," Meth. Mol. Biol., 70:173-187 (1997).;  Viterbo et al., "Isolation of two aspartyl proteases from Trichoderma asperellum expressed uring colonization of cucumber roots,"FEMS Microbiology Ltters, v. 238, No. 1, Sep. 2004, pp. 151-158.;  Yelton, et al., "Transformation of Aspergillus nidulans by using a trpC plasmid," Proc. Natl. Acad. Sci., vol. 81, pp. 1470-1474, Mar. 1984.;  Altschul, Stephen F. et al., "Basic Local Alignment Search Tool," J. Mol. Biol., 215:403-410, 1990.;  Bajar, Aslam, et al., "Identification of a fungal cutinase promoter that is inducible by a plant signal via a phosphorylated trans-acting factor, " Proc. Natl. Acad. Sci. USA, vol. 88, pp. 8208-8212, Sep. 1991.;  Bennett&Lasure (1991) "More Gene Manipulations in Fungi," Academic Press, San Diego, pp. 70-76.;  Berka et al. , "Molecular Cloning and Deletion of the Gene Encoding Aspergillopepsin A From Aspergillus-Awamori," Gene, V.86, N. 2, 1990, pp. 153-162.;  Berka et al., "Isolation and characterization of the Aspergillus oryzae gene encoding aspergillopepsin O," Gene (1993) 125:195-198.;  Boei, E. et al., Two different types of intervening sequences in the glucoamylase gene from Aspergillus niger, The EMBO Journal, vol. 3, No. 7, pp. 1581-1585, 1984.;  Cees, A. M. et al., "Heterologous Gene Expression in Filamentous Fungi," More Gene Manipulations in Fungi, Bennett, J.W. et al., ed., pp. 396-428, Academic Press, 1991.;  Clegg, 1978 In "Biochemical Aspects of New Protein Food", J, Adler-Nissen, B,O, Eggum, L, Munck&H.S. Olsen eds., p. 109-117, Pergamon, Oxford.;  Delgado-Jarana et al., "Aspartyl protease from Trichoderma harzianum CECT 2413: Cloning and characterization," Microbiology,V. 148, N. 5, May 2002.;  Davis, et al., "Genetic and Microbiological Research Techniques for Neurospora crassa," Methods Enzymol., 17:79-143 (1970).;  Database Uniprot Oct. 25, 2004, Aspartyl protease,UNIPROT; Q64ID0.;  Database EMBL, Dec. 3, 2000, "Trichoderma harzianum proA gene for putative aspartate protease,"retrieved from EBI accession No. EM_PRO :AJ276388_UNIPROT:Q9HDT6.US8288517-B2  Brigidi, P., et al., "Genetic transformation of intact cells of Bacillus subtilis by electroporation." FEMS Microbiol. Lett. 67: 135-138, 1990.;  Altschul, S. F., et al., "Basic Local Alignment Search Tool." J. Mol. Biol., 215:403-410, 1990.;  Bajar, A., et al., "Identification of a fungal cutinase promoter that is inducible by a plant signal via a phosphorylated trans-acting factor," Proc. Natl. Acad. Sci. USA 88 : 8208-8212, 1991.;  Berka, R.M. et al., "Isolation and characterization of the Aspergillus oryzae gene encoding aspergillopepsin O." Gene 125: 195-198, 1993.;  Berka, R.M., et al. , "Molecular Cloning and Deletion of the Gene Encoding Aspergillopepsin A from Aspergillus-awamori." Gene 86(2) : 153-162, 1990.;  Boel, E., et al., "Two different types of intervening sequences in the glucoamylase gene from Aspergillus niger." The EMBO Journal 3(7): 1581-1585, 1984.;  Clegg, K.M., "Dietary Enzymatic Hydrolysates of Protein." In Biochemical Aspects of New Protein Food, J, Adler-Nissen, et al., eds., pp.109-117, Pergamon, Oxford, 1978.;  Database EMBL, Dec. 3, 2000, "Trichoderma harzianum proA gene for putative aspartate protease," retrieved from EBI accession No. EM_PRO :AJ276388_UNIPROT:Q9HDT6.;  Database Uniprot Oct. 25, 2004, Aspartyl protease,UNIPROT; Q641D0.;  Davis, R.H., et al., "Genetic and Microbiological Research Techniques for Neurospora crassa." Methods Enzymol. 17: 79-143, 1970.;  Dayhoff, M.O., et al., "A Model of Evolutionary Change in Proteins." In Atlas of Protein Sequence and Structure 5: Suppl. 3 (National Biomedical Research Foundation, Washington, D.C., pp. 345-362, 1978.;  Delgado-Jarana, J., et al., "Aspartyl protease from Trichoderma harzianum CECT 2413: Cloning and characterization." Microbiology 148(5): 1305-1315, 2002.;  Fernandez-Abalos, J.M., et al., "Posttranslational processing of the xylanase Xys1L from Streptomyces halstedii JM8 is carried out by secreted serine proteases." Microbiology 149: 1623-1632, 2003.;  Finkelstein, D., et al., "Transformation." In Biotechnology of Filamentous Fungi Technology and Products, Chapter 6, pp. 113-156, D.B. Finkelstein et al., eds., Butterworth-Heinemann, Boston, MA, 1992.;  Goldman, G.H., et al., "Transformation of Trichoderma harzianum by high-voltage electric pulse." Current Genetics 17: 169-174, 1990.;  Gomi, K., et al. "Cloning and Nucleotide Seouence of the Acid Protease-encoding Gene (pepA) from Aspergillus orvzae." Biosci. Biotech. Biochem. 57(7): 1095-1100, 1993.;  Lorito, M., et al., "Biolistic transformation of Trichoderma harzianum and Gliocladium virens using plasmid and genomic DNA." Current Genetics 24: 349-356, 1993.;  Mullaney, E.J., et al., "Primary structure of the trpC gene from Aspergillus nidulans." Mol. Gen. Genet. 199: 37-45, 1985.;  Needleman, S.B., et al., "A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins." J. Mol. Biol. 48: 443-453, 1970.;  Nevalainen, K.M.H., et al., "The Molecular Biology of Trichoderma and Its Application to the Expression of Both Homologous and Heterologous Genes." In Molecular Industrial Mycology, Leong and Berka, eds., Marcel Dekker, Inc., NY, pp. 129-148, 1992.;  Nunberg, J.H., et al., "Molecular Cloning and Characterization of the Glucoamylase Gene of Aspergillus awamori." Molecular and Cellular Biology 4(11): 2306-2315, 1984.;  Pearson, W.R., et al., "Improved tools for biological sequence comparison." Proc. Natl. Acad. Sci. USA 85: 2444-2448, 1988.;  Penttila, M., et al., "A versatile transformation system for the cellulolytic filamentous fungus Trichoderma reesei." Gene 61: 155-164, 1987.;  RD 216,034_"Enzymatic silk degumming," Research Disclosure Journal, Database No. 216034, 1982.;  Seffernick, J.L., et al., "Melamine Deaminase and Atrazine Chlorohydrolase: 98 Percent Identical but Functionally Different." Journal of Bacteriology 183(8): 2405-2410, 2001.;  Shpaer, E.G., "GeneAssist," In Methods in Molecular Biology, Sequence Data Analysis Guidebook, vol. 70, pp. 173-187, S.R. Swindall, ed., Humana Press, Totowa, NJ, 1997.;  Smith, T.F., et al., "Comparison of Biosequences." Adv. Appl. Math. 2:482-489, 1981.;  Timberlake, W.E., "Cloning and Analysis of Fungal Genes." In More Gene Manipulations in Fungi, J.W. Bennett et al. eds., Academic Press, San Diego, pp. 51-81, 1991.;  Van Den Hondel, C.A.M.J.J., et al., "Heterologous Gene Expression in Filamentous Fungi." In More Gene Manipulations in Fungi, J.W. Bennett, et al. eds., Academic Press, San Diego, pp. 396-428, 1991.;  Viterbo, A., et al., Isolation of two aspartyl proteases from Trichoderma asperellum expressed uring colonization of cucumber roots. 'FEMS Microbiology Letters 238(1): 151-158, 2004.;  Yelton, M.M., et al., "Transformation of Aspergillus nidulans by using a trpC plasmid." Proc. Natl. Acad. Sci. USA, vol. 81, pp. 1470-1474, Mar. 1984.;  Database UniProt 201011 database entry Q8X177_9HYPO, integrated on Mar. 1, 2002, and sequence alignment with SEQ ID No. 9 of the instant application.;  International Search Report and the Written Opinion of the International Searching Authority for International Patent Application No. PCT/US2005/046435 dated Sep. 11, 2006.;  European Search Report and Partial European Search for European Patent Application No. EP 10 01 1492 dated Jul. 26, 2011.